| TCGA_survivalData {signatureSurvival} | R Documentation |
TCGA data for survival analysis
Description
TCGA data is a clinical and microarray dataset consisting of 572 samples (observations) in row and 162 variables (20 clinical variables such as age, sex month, status,race, genotype and 142 DE genes)
Usage
data("TCGA_survivalData")Format
A data frame with 572 observations on the following 162 variables.
samplea character vector
sampleIDa numeric vector
statusa numeric vector
vital_status.demographica character vector
daya numeric vector
montha numeric vector
agea numeric vector
genedera character vector
sexa numeric vector
race.demographica character vector
racea numeric vector
year_of_birth.demographica numeric vector
year_of_death.demographica numeric vector
age_at_diagnosis.diagnosesa numeric vector
days_to_death.demographica numeric vector
egfr_mutation_performeda character vector
eml4_alk_translocation_performeda character vector
followup_treatment_successa character vector
additional_pharmaceutical_therapya character vector
additional_radiation_therapya character vector
SLC25A13a numeric vector
PSMC4a numeric vector
MRE11Aa numeric vector
PTCD2a numeric vector
STYK1a numeric vector
GOLGA5a numeric vector
IARS2a numeric vector
KIF2Aa numeric vector
HLTFa numeric vector
C14orf166a numeric vector
GEMIN2a numeric vector
CDC6a numeric vector
MSH2a numeric vector
FKBP3a numeric vector
PSMC6a numeric vector
PSMB5a numeric vector
CSNK2A1a numeric vector
KNOP1a numeric vector
AVL9a numeric vector
DNAJC2a numeric vector
RPA3a numeric vector
TMEM106Ba numeric vector
COA1a numeric vector
GAPDHa numeric vector
FAF2a numeric vector
UCHL5a numeric vector
CBX3a numeric vector
HNRNPA2B1a numeric vector
CALUa numeric vector
GAD1a numeric vector
PDLIM4a numeric vector
TIMM17Aa numeric vector
NAA35a numeric vector
GOLM1a numeric vector
SULF1a numeric vector
FANCIa numeric vector
CLTCa numeric vector
SDHCa numeric vector
MRPL9a numeric vector
ACP1a numeric vector
FBXO28a numeric vector
PDIA6a numeric vector
SIGMAR1a numeric vector
ADAM12a numeric vector
XRCC4a numeric vector
PLOD2a numeric vector
TMEM87Ba numeric vector
BUB3a numeric vector
DPY19L4a numeric vector
HLCSa numeric vector
PSMC2a numeric vector
SLBPa numeric vector
ORC5a numeric vector
SGPL1a numeric vector
GREM1a numeric vector
VKORC1a numeric vector
ZNF146a numeric vector
CHAF1Aa numeric vector
TK1a numeric vector
FEN1a numeric vector
FRMD5a numeric vector
DPY19L1a numeric vector
CKAP5a numeric vector
ZNF93a numeric vector
SEMA4Ba numeric vector
PRMT3a numeric vector
ERO1La numeric vector
DNAJC9a numeric vector
FMO3a numeric vector
FHL1a numeric vector
DAPK2a numeric vector
PREX2a numeric vector
VPS13Da numeric vector
TGFBR3a numeric vector
NDST1a numeric vector
LIMS2a numeric vector
GLI2a numeric vector
ACACBa numeric vector
PIK3C3a numeric vector
PCM1a numeric vector
RUNX1T1a numeric vector
NCOA1a numeric vector
TTC28a numeric vector
CBX7a numeric vector
CPED1a numeric vector
PTGDSa numeric vector
SPOCK2a numeric vector
GAB1a numeric vector
FOXP1a numeric vector
RAP1Aa numeric vector
TCF21a numeric vector
WDR35a numeric vector
WBP4a numeric vector
SORBS3a numeric vector
TBX2a numeric vector
ITIH5a numeric vector
PZPa numeric vector
ATP1B2a numeric vector
CBFA2T3a numeric vector
GSTM5a numeric vector
GSTM3a numeric vector
ADAMTS8a numeric vector
GYPCa numeric vector
ARHGAP24a numeric vector
PDE5Aa numeric vector
FBLN5a numeric vector
IQSEC1a numeric vector
SNCAa numeric vector
HMBOX1a numeric vector
NFIBa numeric vector
PAMR1a numeric vector
SAP18a numeric vector
IGSF10a numeric vector
ANGPT1a numeric vector
JAM2a numeric vector
PTH1Ra numeric vector
NFASCa numeric vector
DLC1a numeric vector
FIGFa numeric vector
PKNOX2a numeric vector
NDRG2a numeric vector
FRAT1a numeric vector
ANAPC16a numeric vector
TNXBa numeric vector
SFTPCa numeric vector
KCNK3a numeric vector
SYNPOa numeric vector
ID4a numeric vector
PER1a numeric vector
SLIT3a numeric vector
FOXO4a numeric vector
GJA4a numeric vector
PCBP2a numeric vector
ADARB1a numeric vector
PARVAa numeric vector
CFDa numeric vector
ARHGEF15a numeric vector
GPR20a numeric vector
HSBP1a numeric vector
RPS28a numeric vector
TNXAa numeric vector
FXYD1a numeric vector
Source
https://www.cancer.gov/ccg/access-data
Examples
data(TCGA_survivalData)