visSbm.default {shinySbm}

visSbm

Description

A fct that plot a visNetwork plot of a adjacency matrix or an Sbm fit from the sbm package.

Usage

## Default S3 method:
visSbm(
  x,
  labels = "default",
  node_names = NULL,
  directed = "default",
  settings = list()
)

Arguments

x

Sbm model of class 'BipartiteSBM_fit', 'SimpleSBM_fit' or simple numeric 'matrix'.

labels

labels for nodes. If it's simple sbm it should be a single character ("default" -> c("nodes")). If sbm is bipartite a named character (names are row and col) ("default" -> c(row = 'row', col = 'col')).

node_names

if NULL do nothing specific, but list of nodes are given the graph get interactive and nodes names are showed by clicking on a block. In bipartite case a named list:

• "row": character: node names in rows

• "col": character: node names in columns

In unipartite case a single character vector containing the nodes names (Default = NULL).

directed

Boolean indicating whether or not the network is directed by default, a asymmetrical matrix will be seen as directed.

settings

list of settings

Details

List of parameters

• "edge_threshold": "default" erases as many small edges as it can without isolating any nodes (no connection). It can also be a numeric value between 0 and 1, relative (between min and max) filter for small edges value

• "edge_color": character: color of edges (default: "lightblue")

• "arrows": boolean: should edges be arrows

• "arrow_thickness": numeric: arrows size

• "arrow_start": character: "row" or "col" or labels value according to row or columns. The arrow will start from selected to the the other value

• "node_color": named character: Bipartite case c(row = "row_color", col = "col_color"). Unipartite case c("node_color")

• "node_shape": named character: Bipartite case c(row = "row_shape", col = "col_shape"). Unipartite case c("node_shape"). Value from visNetwork shape argument of visEdges function ("triangle","dot","square",etc...)

• "digits": integer: number of digits to show when numbers are shown (default: 2)

Value

a visNetwork visual of the x object