Oyster_run_sec4 {shelltrace}

Runs complete Step 4 of the growth model

Description

Function that combines all functions in Step 4 of the bivalve growth model and runs them consecutively given the right input. de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>

Usage

Oyster_run_sec4(IncG, subincr_matrix, Xstep = 0.1)

Arguments

IncG

Matrix of X- and Y-coordinates of all interpolated sub-increments

subincr_matrix

Revised version of the "yearly_matrix" data frame that contains characteristics calculated for every sub-increment

Xstep

The step size (dx) in X-direction used to interpolate coordinates of shell increments

Details

This function runs the functions Oyster_Z_matrices and Oyster_Volumes consecutively

Value

A list of two items:

subincr_matrix

Revised version of the "incr_matrix" data frame that contains characteristics calculated for every sub-increment

IncGAnet

Matrix of areas of cross sections in YZ-directions sorted by X-values and by sub-increment

Note

Please cite Geoscientific Model Development paper dealing with the ShellTrace model

Author(s)

Niels J. de Winter

Source

GitHub
Manuscript
Supplementary data
Author website

References

de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling growth and trace element uptake in marine bivalve shells: Model verification on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137, in review, 2017.

Examples

  ## Not run: 
    List4<-Oyster_run_sec4(IncG, subincr_matrix4, Xstep = 1)
  
## End(Not run)