Oyster_Shell_thickness {shelltrace} | R Documentation |
Formula that calculates average shell thickness through time
Description
Formula that calculates average shell thickness at the moment of deposition of each shell increment from X- and Y-coordinates of the shell increments and adds the result to the matrix of increment characteristics. de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>
Usage
Oyster_Shell_thickness(cross_section, incr_matrix)
Arguments
incr_matrix |
Matrix listing characteristics of each digitized increment |
cross_section |
Digitized cross section of the shell with shell top, bottom and growth increments relative to a common X-axis |
Details
Shell thickness is calculated as the average difference in Y-values between the shell increment and the top of the shell (Increment 0)
Value
incr_matrix |
Updated matrix listing characteristics of each digitized increment, shell thickness values are added |
A plot of the change in shell thickness with shell age based on the digitized growth increments is produced in a new window
Note
Please cite Geoscientific Model Development paper dealing with the ShellTrace model
Author(s)
Niels J. de Winter
Source
GitHub
Manuscript
Supplementary data
Author website
References
de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling growth and trace element uptake in marine bivalve shells: Model verification on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137, in review, 2017.
Examples
incr_matrix2<-Oyster_Shell_thickness(cross_section, incr_matrix1)