Oyster_Shell_height {shelltrace} | R Documentation |
Formula that calculates shell height through time
Description
Formula that calculates shell height at the moment of deposition of each shell increment from X- and Y-coordinates of the shell increments and adds the result to the matrix of increment characteristics. de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>
Usage
Oyster_Shell_height(cross_section, incr_matrix)
Arguments
incr_matrix |
Matrix listing characteristics of each digitized increment |
cross_section |
Digitized cross section of the shell with shell top, bottom and growth increments relative to a common X-axis |
Details
Shell height is calculated via the Pythagorean Theorem using the X- and Y-coordinates of both ends of the shell increment with extreme X-values
Value
incr_matrix |
Updated matrix listing characteristics of each digitized increment, shell height values as well as the coordinates of both ends of the shell increments are added |
Note
Please cite Geoscientific Model Development paper dealing with the ShellTrace model
Author(s)
Niels J. de Winter
Source
GitHub
Manuscript
Supplementary data
Author website
References
de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling growth and trace element uptake in marine bivalve shells: Model verification on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137, in review, 2017.
Examples
incr_matrix3<-Oyster_Shell_height(cross_section, incr_matrix2)