editBaseline {shazam}

Edit the Baseline object

Description

editBaseline edits a field in a Baseline object.

Usage

editBaseline(baseline, field, value)

Arguments

baseline

Baseline object to be edited.

field

name of the field in the Baseline object to be edited.

value

value to set the field.

Value

A Baseline object with the field of choice updated.

See Also

See Baseline for the input and return object.

Examples

# Subset example data as a demo
data(ExampleDb, package="alakazam")
db <- subset(ExampleDb, c_call == "IGHG" & sample_id == "+7d")
set.seed(112)
db <- dplyr::slice_sample(db, n=100)

# Make Baseline object
baseline <- calcBaseline(db, 
                         sequenceColumn="sequence_alignment",
                         germlineColumn="germline_alignment_d_mask", 
                         testStatistic="focused",
                         regionDefinition=IMGT_V,
                         targetingModel=HH_S5F,
                         nproc=1)
                         
# Edit the field "description"
baseline <- editBaseline(baseline, field="description", 
                         value="+7d IGHG")