RegionDefinition-class {shazam}

S4 class defining a region definition

Description

RegionDefinition defines a common data structure for defining the region boundaries of an Ig sequence.

Slots

name

name of the RegionDefinition.

description

description of the model and its source.

boundaries

factor defining the region boundaries of the sequence. The levels and values of boundaries determine the number of regions.

seqLength

length of the sequence.

regions

levels of the boundaries; e.g, c("cdr", "fwr").

labels

labels for the boundary and mutations combinations; e.g., c("cdr_r", "cdr_s", "fwr_r", "fwr_s").

citation

publication source.

See Also

See IMGT_SCHEMES for a set of predefined RegionDefinition objects.