| sharpr2-package {sharpr2} | R Documentation |
Estimating regularoty scores and identifying high resolution driver elements for ATAC-STARR data
Description
The package develops an algorithm for identifying high-resolution driver elements for datasets from an ATAC-STARR library.
Details
| Package: | sharpr2 |
| Type: | Package |
| Version: | 1.1.1.0000 |
| Date: | 2018-05-12 |
| License: | GPL |
Author(s)
Liang He
Maintainer: Liang He <lianghe@mit.edu>
References
High-resolution genome-wide functional dissection of transcriptional regulatory regions in human. Xinchen Wang, Liang He, Sarah Goggin, Alham Saadat, Li Wang, Melina Claussnitzer, Manolis Kellis. bioRxiv 193136; doi: https://doi.org/10.1101/193136
Examples
data(hidra_ex)
re <- sharpr2(hidra_ex[1:2000,], l_min = 150, l_max = 600, f_dna = 5, f_rna = 0, sig=FALSE)
[Package sharpr2 version 1.1.1.0 Index]