shape {shapeR}

An example shapeR instance including 160 images.

Description

The shape coefficients have been generated. The wavelet coefficients have been standardized using pop and length_cm.

Usage

data(shape)

Format

A shapeR class including 160 images

Details

The class slot's are as follows:

• project.path. A path as "ShapeAnalysis/"

• info.file. A file as FISH.csv. The information is stored in the data frame master.list

• outline.list. A list with three elements (IC, NO, SC) which give a list of the otolith outlines

• filter. A logical vector showing which elements of the master list have valid otoliths

• fourier.coef. A matrix of the Normalized Elliptic Fourier coefficients

• wavelet.coef. A matrix of the wavelet coefficients

• shape. A matrix of shape variables after scaling according to calibration otolith.area, otolith.length, otolith.width, otolith.perimeter.

• fourier.coef.std. A matrix which will contain standardized Fourier coefficients

• wavelet.coef.std. A matrix which will contain standardized wavelet coefficients

• shape.coef.raw. A matrix of shape variables before scaling according to calibration otolith.area, otolith.length, otolith.width, otolith.perimeter.

• master.list. The contents of the info.file

Source

https://github.com/lisalibungan/shapeR