R: simulate antibody kinetics of y over a time interval

simresp.tinf {serocalculator}

R Documentation

simulate antibody kinetics of y over a time interval

simulate antibody kinetics of y over a time interval

simresp.tinf(
  lambda,
  t.end,
  age.fx,
  antigen_isos,
  n.mc = 0,
  renew.params,
  predpar,
  ...
)

`lambda`	seroconversion rate (1/days),
`t.end`	end of time interval (beginning is time 0) in days(?)
`age.fx`	parameter estimates for fixed age (age.fx in years) or not. when age.fx = NA then age at infection is used.
`antigen_isos`	antigen isotypes
`n.mc`	a posterior sample may be selected (1:4000), or not when n.mc = 0 a posterior sample is chosen at random.
`renew.params`	At infection, a new parameter sample may be generated (when `renew.params = TRUE`). Otherwise (when `renew.params = FALSE`), a sample is generated at birth and kept, but baseline y0 are carried over from prior infections.
`predpar`	an `array()` with dimensions named: `antigen_iso` `parameter` `obs`
`...`	Arguments passed on to `row_longitudinal_parameter`, `ab`, `mk_baseline` `age` age at infection `nmc` mcmc sample to use `npar` number of parameters `t` age at infection? `par` parameters `kab` index for which row of antibody baseline limits to read from `blims` `n` number of observations `blims` range of possible baseline antibody levels

This function returns a list() with:

[Package serocalculator version 1.0.3 Index]