| Wood {seriation} | R Documentation |
Gene Expression Data for Wood Formation in Poplar Trees
Description
A data matrix containing a sample of the normalized gene expression data for 6 locations in the stem of Popla trees published in the study by Herzberg et al (2001). The sample of 136 genes selected by Caraux and Pinloche (2005).
Format
The format is a 136 x 6 matrix.
Source
The data was obtained from http://www.atgc-montpellier.fr/permutmatrix/manual/Exemples/Wood/Wood.htm.
References
Hertzberg M., H. Aspeborg, J. Schrader, A. Andersson, R.Erlandsson, K. Blomqvist, R. Bhalerao, M. Uhlen, T. T. Teeri, J. Lundeberg, Bjoern Sundberg, P. Nilsson and Goeran Sandberg (2001): A transcriptional roadmap to wood formation, PNAS, 98(25), 14732–14737.
Caraux G. and Pinloche S. (2005): PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order, Bioinformatics, 21(7) 1280–1281.
See Also
Other data:
Chameleon,
Irish,
Munsingen,
SupremeCourt,
Townships,
Zoo,
create_lines_data(),
is.robinson()
Examples
data(Wood)
head(Wood)