PlotSeqSum {sequoia}

Plot Summary Overview of sequoia Output

Description

visualise the numbers of assigned parents, sibship sizes, and parental LLRs

Usage

PlotSeqSum(SeqSum, Pedigree = NULL, Panels = "all", ask = TRUE)

Arguments

SeqSum

list output from SummarySeq.

Pedigree

dataframe with at least id, dam and sire in columns 1-3, respectively. If columns with parental LLRs and/or Mendelian errors are present, these will be plotted as well.

Panels

character vector with panel(s) to plot. Choose from 'all', 'G.parents' (parents of genotyped individuals), 'D.parents' (parents of dummies), 'O.parents' (parents of non-genotyped non-dummies), sibships', 'LLR', 'OH'.

ask

ask for user key stroke before proceeding to next plot.

Examples

sumry <- SummarySeq(SeqOUT_griffin, Plot=FALSE)
PlotSeqSum(sumry, SeqOUT_griffin$Pedigree, Panels='all', ask=FALSE)