tabix.read.header {seqminer}

Read tabix file, similar to running tabix in command line.

Description

Read tabix file, similar to running tabix in command line.

Usage

tabix.read.header(tabixFile, skippedLine = FALSE)

Arguments

tabixFile

character, an tabix indexed file

skippedLine

logical, whether to read tabix skipped lines (when used 'tabix -S NUM')

Value

a list

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

fileName = system.file("vcf/all.anno.filtered.extract.vcf.gz", package = "seqminer")
snp <- tabix.read.header(fileName)