readBGENToListByRange {seqminer}

Read information from BGEN file in a given range and return a list

Description

Read information from BGEN file in a given range and return a list

Usage

readBGENToListByRange(fileName, range)

Arguments

fileName

character, represents an input BGEN file (Bgzipped, with Tabix index)

range

character, a text indicating which range in the BGEN file to extract. e.g. 1:100-200, 1-based index

Value

a list of chrom, pos, varid, rsid, alleles, isPhased, probability, sampleId

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

fileName = system.file("bgen/all.anno.filtered.extract.bgen", package = "seqminer")
cfh <- readBGENToListByRange(fileName, "1:196621007-196716634")