getCovPair {seqminer}

Extract pair of positions by ranges

Description

Extract pair of positions by ranges

Usage

getCovPair(covData, rangeList1, rangeList2)

Arguments

covData

a covariance matrix with positions as dimnames

rangeList1

character specify a range, 1-based index

rangeList2

character specify a range, 1-based index

Value

a covariance matrix covFileName = system.file("rvtests/rvtest.MetaCov.assoc.gz", package = "seqminer") cfh <- rvmeta.readCovByRange(covFileName, "1:196621007-196716634") rangeList1 <- "1:196621007-196700000" rangeList2 <- "1:196700000-196716634" getCovPair(cfh, rangeList1, rangeList2)