download_genbank {seqmagick}

download_genbank

Description

download genbank or fasta file by accession number

Usage

download_genbank(acc, db = "nuccore", format = "genbank", outfile = NULL, ...)

Arguments

acc

accession number(s)

db

supported db, currently 'nuccore'

format

one of 'genbank' or 'fasta'

outfile

output file, by default, acc.gb or acc.fa

...

additional parameters for download.file

Value

output file vector

Author(s)

Guangchuang Yu

Examples

## Not run: 
tmpgb <- tempfile(fileext = '.gb')
tmpfa <- tempfile(fileext = '.fa')
download_genbank(acc='AB115403', format='genbank', outfile=tmpgb)
download_genbank(acc='AB115403', format='fasta', outfile=tmpfa)

## End(Not run)