bs_hamming {seqmagick} | R Documentation |
bs_hamming
Description
hamming distances of sequences
Usage
bs_hamming(x, count_indel = FALSE, ...)
Arguments
x |
BStringSet object |
count_indel |
whether count indel or not |
... |
additional parameters |
Value
hamming distance
Author(s)
Guangchuang Yu
Examples
## Not run:
fa_file <- system.file("extdata/HA.fas", package="seqmagick")
x <- fa_read(fa_file)
## align first 5 sequences, use `bs_aln(x)` to align all sequences
aln <- bs_aln(x[1:5])
bs_hamming(aln)
## End(Not run)
[Package seqmagick version 0.1.7 Index]