where.is.this.acc {seqinr} | R Documentation |
Scans databases for a given sequence accession number
Description
This function loops over all availabale ACNUC databases to look for a given sequence accession number. This is useful when you have a sequence accession number and you don't know in which database it is present.
Usage
where.is.this.acc(acc, stopAtFirst = TRUE, ...)
Arguments
acc |
An accession number as a string of characters such as |
stopAtFirst |
Logical. If TRUE, the default, the function stops at the first database where the accession number is found. |
... |
Arguments passed to the function |
Value
The function resturns invisibly a vector of strings of characters for the names of the ACNUC databases in which the accession number was found.
Author(s)
J.R. Lobry
References
citation("seqinr")
See Also
choosebank
to open a given ACNUC database.
Examples
## Not run: # Need internet connection
where.is.this.acc("NC_001416") # first found in phever2dna bank (2016-06-01)
## End(Not run)
[Package seqinr version 4.2-36 Index]