gfrag {seqinr} | R Documentation |
Extract sequence identified by name or by number from an ACNUC server
Description
Get length
characters from sequence identified by name or by number
starting from position start
(counted from 1).
Usage
gfrag(what, start, length, idby = c("name", "number"), socket = autosocket())
Arguments
what |
A sequence name or number |
start |
Start position from 1 |
length |
Number of requested characters (answer may be shorter) |
idby |
Is the sequence identified by name or number? Default to name |
socket |
an object of class |
Value
A string of characters with at most length
characters (may be
shorter than asked for). NA is returned and a warning is issued in
case of problem (non existent sequence for instance).
Author(s)
J.R. Lobry
References
https://doua.prabi.fr/databases/acnuc.html
citation("seqinr")
See Also
Examples
## Not run: # Need internet connection
choosebank("emblTP")
gfrag("LMFLCHR36", start = 1, length = 3529852) -> myseq
stopifnot(nchar(myseq) == 3529852)
closebank()
## End(Not run)
[Package seqinr version 4.2-36 Index]