sensi_plot.sensiTree_Samp {sensiPhy}

Graphical diagnostics for class 'sensiTree_samp'

Description

sensi_plot.sensiTree_Samp Plot results from sensiTree_Samp_phylm and sensiTree_Samp_phyglm

Usage

## S3 method for class 'sensiTree_Samp'
sensi_plot(x, graphs = "all", ...)

Arguments

x

output from sensiTree_Samp_phylm or sensiTree_Samp_phyglm

graphs

choose which graph should be printed on the output ("all", 1,2,3 or 4)

...

further arguments to methods

Details

For 'x' from sensiTree_Samp_phylm or sensiTree_Samp_phyglm:

Graph 1: : Estimated estimates for each simulation across percentages of species removed. Small red dots represent individual estimates for each iteration (tree or intra) across percentages of removed species. Large dots represent the average among these estimates within each iteration and percentage of species removal. Different estimates within the same percentage interval represent different iterations (tree or intra).

Graph 2: : The percentage of significant estimates (p < 0.05) across the percentage of species removed. Small red dots represent individual iterations (tree or intra) while large dots represent the average among these iterations.

Note

If model = "BM", only plots 1, 2 and 4 are printed. Plot 3, phylogenetic model parameter is not available for model = "BM"

Author(s)

Gustavo Paterno

See Also

ggplot, samp_phylm samp_phyglm