odeModel-class {seeds}

A class to store the important information of an model.

Description

The slots are used to store the important information of an model. The class is used to create object for the two algorithms implemented in seeds. Methods are implemented to easily calculate the nominal solution of the model and change the details of the saved model. The numerical solutions are calculated using the deSolve - package.

Value

an object of class odeModel which defines the model

Slots

func

A funtion containing the ode-equations of the model. For syntax look at the given examples of the deSolve package.

times

timesteps at which the model should be evaluated

parms

the parameters of the model

input

matrix containing the inputs with the time points

measFunc

function that converts the output of the ode solution

y

initial (state) values of the ODE system, has to be a vector

meas

matrix with the (experimental) measurements of the system

sd

optional standard deviations of the measurements, is used by the algorithms as weights in the costfunction

custom

customized link function

nnStates

bit vector that indicates if states should be observed by the root function

nnTollerance

tolerance at which a function is seen as zero

resetValue

value a state should be set to by an event