odeEquations-class {seeds}

A S4 class used to handle formatting ODE-Equation and calculate the needed functions for the seeds-algorithm

Description

A S4 class used to handle formatting ODE-Equation and calculate the needed functions for the seeds-algorithm

Value

Returns a s4 class object containing the needed equations for the costate equation

Slots

modelStr

a vector of strings describing the ODE

measureStr

a vector of strings representing the equation of the measurement function

origEq

a vector of strings containing the original model function

measureFunction

a vector of strings containing the original measurement function

costateEq

a vector of strings describing the costate equation

JhT

a matrix of strings describing the jacobian matrix of the measurement function

jacobian

a matrix of strings representing the jacobian matrix model equations

costFunction

a string containing the cost function

hamiltonian

a string representing the Hamilton function of the model

dynamicElasticNet

boolean that indicates if the system equation should be calculated for the dynamic elastic net

parameters

parameters of the model

cond

a slot to save conditionals in equations, which are used for formatting the c files

nnStates

vector indicating which states should have a non negative solution