| createCompModel {seeds} | R Documentation |
Create compilable c-code of a model
Description
Writes a c file that can be compiled for faster solution with the ode solver.
The file created is formatted to be used with the dynamic elastic net. A hidden input is
added to every component of the state vector.
Usage
createCompModel(modelFunc, parameters, bden, nnStates)
Arguments
modelFunc |
a R-function that can be solved with deSolve. External input of the system should be declared with 'u'. To ensure that the function is working use the most general state-space representation. |
parameters |
a vector describing the parameters of the system. If names are missing the function tries to extract the declared parameters from the model function. |
bden |
a boolean that indicates if the c-file is used for the mcmc algorithm, default value is 'FALSE' |
nnStates |
a bit vector indicating the states that should be non negative |
Value
None
Note
On the usage of compiled code in conjunction with deSolve take a look into the vignette 'R Package deSolve, Writing Code in Compiled Languages' of the package.