PlotPFMs {sedproxy}

Plot forward modelled sedimentary proxies

Description

Plot forward modelled sedimentary proxies

Usage

PlotPFMs(
  PFMs,
  stage.order = c("var", "seq"),
  plot.stages = c("default"),
  max.replicates = 5,
  colr.palette = "default",
  alpha.palette = "default",
  levl.labels = "default"
)

Arguments

PFMs

A dataframe of forward modelled proxies

stage.order

Controls the order in which proxy stages are plotted, either sequentially, "seq", or in order of variance, "var". Defaults to var.

plot.stages

Proxy stages to be plotted, "default", "all", or a custom character vector

max.replicates

Maximum number of replicates to plot at once

colr.palette

Colours for the proxy stages

alpha.palette

Alpha levels for the proxy stages

levl.labels

Labels for the proxy stages

Value

a ggplot object of class "gg" "ggplot"

Examples

library(ggplot2)
set.seed(26052017)
clim.in <- ts(N41.t21k.climate[nrow(N41.t21k.climate):1,] - 273.15)

PFM <- ClimToProxyClim(clim.signal = clim.in,
                       timepoints = round(N41.proxy$Published.age),
                       calibration.type = "identity",
                       habitat.weights = N41.G.ruber.seasonality,
                       sed.acc.rate = N41.proxy$Sed.acc.rate.cm.ka,
                       sigma.meas = 0.45,
                       sigma.ind = 0,
                       n.samples = Inf,
                       plot.sig.res = 10, meas.bias = 1,
                       n.replicates = 10)

PlotPFMs(PFM$everything, max.replicates = 1, stage.order = "seq") +
  facet_wrap(~stage)

PlotPFMs(PFM$everything, max.replicates = 1, stage.order = "var")

PlotPFMs(PFM$everything, stage.order = "var", plot.stages = "all")