parse_tax {schtools}

Convert taxonomy strings into dataframe of labels based on taxonomic classification

Description

Convert taxonomy strings into dataframe of labels based on taxonomic classification

Usage

parse_tax(dat)

Arguments

dat

dataframe from mothur taxonomy file with columns OTU, Size, and Taxonomy

Value

a wide dataframe with taxonomic labels

Author(s)

Nick Lesniak, [e-mail]

Examples

taxonomy_filepath <- system.file("extdata",
  "test.taxonomy",
  package = "schtools"
)
taxonomy_tbl <- read_tax(taxonomy_filepath)
head(taxonomy_tbl)