collapseGraphSum {sccore}

Collapse Graph By Sum

Description

Collapse Graph By Sum

Usage

collapseGraphSum(graph, groups, normalize = TRUE)

Arguments

graph

igraph graph object Graph to be collapsed

groups

factor on vertices describing cluster assignment (can specify integer vertex ids, or character vertex names which will be matched)

normalize

boolean Whether to recalculate edge weight as observed/expected (default=TRUE)

Value

collapsed graph

Examples

collapsed = collapseGraphPaga(conosGraph, igraph::V(conosGraph), linearize=TRUE, winsorize=FALSE)