reviewNeuronsMoreFrames {scalpel}

Save additional frames for manually classifying the identified neurons from SCALPEL.

Description

We use this function after running reviewNeurons or reviewNeuronsInteractive to plot additional frames for neurons whose classification was unclear from the single frame plotted. The additional frames are saved, and the classification for the neurons can then be updated using updateNeurons or updateNeuronsInteractive.

Usage

reviewNeuronsMoreFrames(scalpelOutput, neuronSet, numFrames = 10)

Arguments

scalpelOutput

An object returned by one of the SCALPEL functions: scalpel, scalpelStep2, or scalpelStep3.

neuronSet

The set of neurons that should be reviewed: use "A" for those resulting from scalpelStep2 and saved as scalpelOutput$A, or use "Afilter" for those resulting from scalpelStep3 and saved as scalpelOutput$Afilter. This argument is ignored if the class of scalpelOutput is scalpelStep2.

numFrames

The maximum number of frames that should be saved for each neuron being considered. Each neuron has a number of frames equal to the number of members in that neuron's cluster that can be plotted. All frames will be saved when the total number of available frames for the neuron is less than numFrames. The default value is 10.

Value

None

See Also

reviewNeurons, updateNeurons, reviewNeuronsInteractive, updateNeuronsInteractive

Examples

## Not run: 
### many of the functions in this package are interconnected so the
### easiest way to learn to use the package is by working through the vignette,
### which is available at ajpete.com/software

#assumes you have run the example for the "reviewNeuronsInteractive" function

#we save frames for the neurons previously classified
#as "?" using the "reviewNeuronsInteractive" function
reviewNeuronsMoreFrames(scalpelOutput = scalpelOutput, neuronSet = "A")

## End(Not run)