getNeuronStatus {scalpel} | R Documentation |
Read in the manual classifications of neurons from SCALPEL.
Description
This function allows the user to read in the manual classifications of neurons, based on the classifying done using
reviewNeurons
or reviewNeuronsInteractive
.
Usage
getNeuronStatus(scalpelOutput, neuronSet)
Arguments
scalpelOutput |
An object returned by one of the SCALPEL functions:
|
neuronSet |
The set of neurons that should be reviewed:
use |
Value
A vector of length equal to the number of columns in scalpelOutput$A
if neuronSet="A"
or scalpelOutput$Afilter
if neuronSet="Afilter"
.
The elements give the manual classifications of the neurons. The possible classifications are: "yes"
if
a neuron is to be kept, "no"
if a neuron is to be discarded, "unsure"
if a neuron needs to be reviewed further, and
NA
if a neuron has not yet been classified.
See Also
reviewNeurons
, reviewNeuronsInteractive
Examples
## Not run:
### many of the functions in this package are interconnected so the
### easiest way to learn to use the package is by working through the vignette,
### which is available at ajpete.com/software
#assumes you have run the example for the "updateNeurons" function
getNeuronStatus(scalpelOutput = scalpelOutput, neuronSet = "Afilter")
## End(Not run)