scRNAtools_inter_net {scRNAtools}

Construction of interactive network in scRNA sequencing data

Description

Construction of interactive network based on scRNa sequencing data.

Usage

scRNAtools_inter_net(corr_re, p, r, size, color)

Arguments

corr_re

The results of correlation analysis, which including four columns, the first two columns are genes and the last two columns are correlation index and p-value,respectively.

p

The p-value of correlation index.

r

Correlation index

size

The size of nodes in the network.

color

The color of nodes in the network.

Author(s)

Qian Yang

Examples

data(corr_re)
p<-0.05
r<-0.9
size<-5 #nodes size
color<-"#00B2EE" ##Color of nodes.
pdf(file=file.path(tempdir(), "interact_net.pdf"))
scRNAtools_inter_net(corr_re,p,r,size,color)
dev.off()