scRNAtools_cor_map {scRNAtools}

Correlation analysis

Description

Correlation analysis of interested gene set or differentially expressed gene set.

Usage

scRNAtools_cor_map(exam1, types_all, type, methods)

Arguments

exam1

scRNA sequencing data of several genes and cells.

types_all

Cell names of each type.

type

Cell type.

methods

correlation methods including "pearson", "kendall" and "spearman".

Details

Return the correlation index of each two genes.

Author(s)

Qian Yang

Examples

data(exam1)
data(types_all)
type<-"Malignant";
methods<-"pearson";##methods = c("pearson", "kendall", "spearman").
pdf(file=file.path(tempdir(), "correlation_color.pdf"))
scRNAtools_cor_map(exam1,types_all,type,methods)
dev.off()