scRNAtools_DEGsA {scRNAtools}

Identification of differentially expressed genes

Description

Users can identify differentially expressed genes between two type of cells based on fold change value.

Usage

scRNAtools_DEGsA(example, types_all, type1, type2, num)

Arguments

example

scRNA sequencing data with header.

types_all

Cell types in the example data.

type1

Cell type one.

type2

Cell type two.

num

Threshold value of expressed genes in appointed cell types. For example, we set 0.8 in example section.

Details

The output data is the fold change value of differentially expressed genes.

Author(s)

Qian Yang

Examples

data(example)
data(types)
type1<-"No malignant"
type2<-"Malignant"
num<-0.8;###type1 Vs type2
pdf(file=file.path(tempdir(), "DEGs.pdf"))
scRNAtools_DEGsA(example,types_all,type1,type2,num)
dev.off()