basic_find_markers {scRNAstat}

Basic Find Markers

Description

To find de 'novo' markers by 'FindAllMarkers' from Seurat with default setting.

Usage

basic_find_markers(sce, group = "seurat_clusters", dir = ".")

Arguments

sce

An object of class Seurat

group

default:seurat_clusters, you can change it to celltype

dir

path for saving results

Value

sce.markers a data.frame of markers.

Examples

basic_find_markers(AJ064_small_last_sce,dir=tempdir())