basic_filter {scRNAstat}

basic_filter

Description

filter the genes which show expression less than 3 cells. filter the cells which percent_mito < 25 & percent_ribo > 3 & percent_hb < 10 filter the cells which nFeature_RNA > 300 & nFeature_RNA < 8000

Usage

basic_filter(sce)

Arguments

sce

An object of class Seurat

Value

sce.all.filt An object of class Seurat

Examples

basic_filter(AJ064_small_sce)