SHR_m154211 {scPloidy} | R Documentation |
Liver Cells from a Rat
Description
The dataset includes 3572 nuclei obtained from the liver of
a 16 weeks old male rat, which was fed normal diet.
Overlapping of single-nucleus ATAC-seq fragments was computed with the
fragmentoverlapcount
function and saved as fragmentoverlap
.
The cell type of the nuclei are saved in the data.frame cells
.
The data for rat SHR_m154211 was taken from the publication cited below.
Usage
data(SHR_m154211)
Format
An object of class list
of length 2.
Source
Takeuchi et al. (2022) bioRxiv doi:10.1101/2022.07.12.499681
Examples
data(SHR_m154211)
fragmentoverlap = SHR_m154211$fragmentoverlap
p = ploidy(fragmentoverlap, c(2, 4, 8))
head(p)
cells = SHR_m154211$cells
table(cells$celltype, p$ploidy.moment[match(cells$barcode, p$barcode)])
[Package scPloidy version 0.6.2 Index]