plotMatchedOntoTree {scOntoMatch} | R Documentation |
Plot a ontology tree with matched ontology from ontoMatch
Description
Plot a ontology tree with matched ontology from ontoMatch
Usage
plotMatchedOntoTree(
obj_list,
ont,
anno_col = "cell_ontology_mapped",
onto_id_col,
roots = c("CL:0000548"),
...
)
Arguments
obj_list |
a list of seurat obj files as the output of ontoMatch |
ont |
ontology object |
anno_col |
the cell ontology text annotation column name |
onto_id_col |
if also have ontology id column for direct mapping |
roots |
root ontology in tree to plot, default "animal cells" in cell ontology |
... |
additional parameters for ontologyPlot::onto_plot |
Value
a lit of matched ontology tree plot
Examples
## Not run:
plotMatchedOntoTree(seurat_obj_list, ont, 'cell_ontology_mapped', 'ontology_id')
## End(Not run)
[Package scOntoMatch version 0.1.1 Index]