ontoTranslate {scOntoMatch}

translate named list of obj_list to named list of cell ontology ids per obj

Description

translate named list of obj_list to named list of cell ontology ids per obj

Usage

ontoTranslate(obj_list, ont, onto_id_col, anno_col)

Arguments

obj_list

a named list of seurat object

ont

ontologyIndex object

onto_id_col

if also have ontology id column for direct mapping

anno_col

the cell ontology text annotation column name

Value

a named list of cell ontology ids

Examples

## Not run: 
ontoTranslate(seurat_obj_list, ont, 'ontology_name', 'ontology_id')

## End(Not run)