get_gene_symbol {scMappR} | R Documentation |
Internal – get gene symbol from Panglao.db assigned gene-names (symbol-ensembl).
Description
Internal – removes Ensembl signature appended to signature matrix from Panglao and figure out species by pre-fix Ensembl of the Ensembl ID that is appended to gene names.
Usage
get_gene_symbol(wilcoxon_rank_mat_t)
Arguments
wilcoxon_rank_mat_t |
Matrix where row names are "GeneSymbol-Ensembl" (human or mouse). |
Details
Internal: This function removes the ENGMUS/ENGS tag from Panglao created gene names (symbol-ENGS). From the ENSG/ENSMUS, this function determines if the species is mouse/human and returns the gene symbols.
Value
List with the following elements:
rowname |
Genes in the signature matrix excluding the ensemble name. |
species |
"mouse" or "human" depending on appended ensembl symbols. |
Examples
# load signature
data(POA_example)
POA_OR_signature <- POA_example$POA_OR_signature
symbols <- get_gene_symbol(POA_OR_signature)
[Package scMappR version 1.0.11 Index]