plot_gsea_sub {scITD}

Look at enriched gene sets from a cluster of semantically similar gene sets. Uses the results from previous run of plot_gsea_hmap_w_similarity()

Description

Look at enriched gene sets from a cluster of semantically similar gene sets. Uses the results from previous run of plot_gsea_hmap_w_similarity()

Usage

plot_gsea_sub(container, clust_select, thresh = 0.05)

Arguments

container

environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses

clust_select

numeric The cluster to plot gene sets from. On the previous semantic similarity plot, cluster numbering starts from the top as 1.

thresh

numeric Color threshold to use for showing significance (default=0.05)

Value

A heatmap plot from ComplexHeatmap showing one semantic similarity cluster of enriched gene sets with adjusted p-values for each cell type.