plot_gsea_hmap_w_similarity {scITD}

Plot already computed enriched gene sets to show semantic similarity between sets

Description

Plot already computed enriched gene sets to show semantic similarity between sets

Usage

plot_gsea_hmap_w_similarity(
  container,
  factor_select,
  direc,
  thresh,
  exclude_words = character(0)
)

Arguments

container

environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses

factor_select

numeric The factor to plot

direc

character Set to either 'up' or 'down' to use the appropriate sets

thresh

numeric Pvalue threshold to use for including gene sets in the heatmap

exclude_words

character Vector of words to exclude from word cloud (default=character(0))

Value

No value is returned. A heatmap showing enriched gene sets clustered by semantic similarity is drawn.