normalize_counts {scITD}

Helper function to normalize and log-transform count data

Description

Helper function to normalize and log-transform count data

Usage

normalize_counts(count_data, scale_factor = 10000)

Arguments

count_data

matrix or sparse matrix Gene by cell matrix of counts

scale_factor

numeric The number that gets multiplied by fractional counts during normalization of the pseudobulked data (default=10000)

Value

The normalized, log-transformed matrix.