norm_var_helper {scITD} | R Documentation |
Calculates the normalized variance for each gene. This is adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/R/Pagoda2.R Generally, this should be done through calling the form_tensor() wrapper function.
Description
Calculates the normalized variance for each gene. This is adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/R/Pagoda2.R Generally, this should be done through calling the form_tensor() wrapper function.
Usage
norm_var_helper(scMinimal)
Arguments
scMinimal |
environment A sub-container for the project typically consisting of gene expression data in its raw and processed forms as well as metadata |
Value
A list with the first element containing a vector of the normalized variance for each gene and the second element containing log-transformed adjusted p-values for the overdispersion of each gene.
[Package scITD version 1.0.4 Index]