| msigdb_qc_gene_list {scCustomize} | R Documentation |
QC Gene Lists
Description
Gene symbols for qc percentages from MSigDB database. The gene sets are from 3 MSigDB lists: "HALLMARK_OXIDATIVE_PHOSPHORYLATION", "HALLMARK_APOPTOSIS", and "HALLMARK_DNA_REPAIR".
Usage
msigdb_qc_gene_list
Format
A list of 18 vectors
- Homo_sapiens_msigdb_oxphos
Genes in msigdb "HALLMARK_OXIDATIVE_PHOSPHORYLATION" list for human
- Homo_sapiens_msigdb_apop
Genes in msigdb "HALLMARK_APOPTOSIS" list for human
- Homo_sapiens_msigdb_dna_repair
Genes in msigdb "HALLMARK_DNA_REPAIR" list for human
- Mus_musculus_msigdb_oxphos
Genes in msigdb "HALLMARK_OXIDATIVE_PHOSPHORYLATION" list for mouse
- Mus_musculus_msigdb_apop
Genes in msigdb "HALLMARK_APOPTOSIS" list for mouse
- Mus_musculus_msigdb_dna_repair
Genes in msigdb "HALLMARK_DNA_REPAIR" list for mouse
- Rattus_norvegicus_msigdb_oxphos
Genes in msigdb "HALLMARK_OXIDATIVE_PHOSPHORYLATION" list for rat
- Rattus_norvegicus_msigdb_apop
Genes in msigdb "HALLMARK_APOPTOSIS" list for rat
- Rattus_norvegicus_msigdb_dna_repair
Genes in msigdb "HALLMARK_DNA_REPAIR" list for rat
- Drosophila_melanogaster_msigdb_oxphos
Genes in msigdb "HALLMARK_OXIDATIVE_PHOSPHORYLATION" list for fly
- Drosophila_melanogaster_msigdb_apop
Genes in msigdb "HALLMARK_APOPTOSIS" list for fly
- Drosophila_melanogaster_msigdb_dna_repair
Genes in msigdb "HALLMARK_DNA_REPAIR" list for fly
- Dario_rerio_msigdb_oxphos
Genes in msigdb "HALLMARK_OXIDATIVE_PHOSPHORYLATION" list for zebrafish
- Dario_rerio_msigdb_apop
Genes in msigdb "HALLMARK_APOPTOSIS" list for zebrafish
- Dario_rerio_msigdb_dna_repair
Genes in msigdb "HALLMARK_DNA_REPAIR" list for zebrafish
- Macaca_mulatta_msigdb_oxphos
Genes in msigdb "HALLMARK_OXIDATIVE_PHOSPHORYLATION" list for macaque
- Macaca_mulatta_msigdb_apop
Genes in msigdb "HALLMARK_APOPTOSIS" list for macaque
- Macaca_mulatta_msigdb_dna_repair
Genes in msigdb "HALLMARK_DNA_REPAIR" list for macaque
Source
MSigDB gene sets via msigdbr package https://cran.r-project.org/package=msigdbr