Cluster_Highlight_Plot {scCustomize} | R Documentation |
Cluster Highlight Plot
Description
Create Plot with cluster of interest highlighted
Usage
Cluster_Highlight_Plot(
seurat_object,
cluster_name,
highlight_color = NULL,
background_color = "lightgray",
pt.size = NULL,
aspect_ratio = NULL,
figure_plot = FALSE,
raster = NULL,
raster.dpi = c(512, 512),
label = FALSE,
split.by = NULL,
split_seurat = FALSE,
ggplot_default_colors = FALSE,
...
)
Arguments
seurat_object |
Seurat object name. |
cluster_name |
Name(s) (or number(s)) identity of cluster to be highlighted. |
highlight_color |
Color(s) to highlight cells. The default is NULL and plot will use
|
background_color |
non-highlighted cell colors. |
pt.size |
point size for both highlighted cluster and background. |
aspect_ratio |
Control the aspect ratio (y:x axes ratio length). Must be numeric value; Default is NULL. |
figure_plot |
logical. Whether to remove the axes and plot with legend on left of plot denoting
axes labels. (Default is FALSE). Requires |
raster |
Convert points to raster format. Default is NULL which will rasterize by default if greater than 200,000 cells. |
raster.dpi |
Pixel resolution for rasterized plots, passed to geom_scattermore(). Default is c(512, 512). |
label |
Whether to label the highlighted cluster(s). Default is FALSE. |
split.by |
Feature to split plots by (i.e. "orig.ident"). |
split_seurat |
logical. Whether or not to display split plots like Seurat (shared y axis) or as individual plots in layout. Default is FALSE. |
ggplot_default_colors |
logical. If |
... |
Extra parameters passed to |
Value
A ggplot object
Examples
Cluster_Highlight_Plot(seurat_object = pbmc_small, cluster_name = "1", highlight_color = "gold",
background_color = "lightgray", pt.size = 2)