Case_Check {scCustomize}

Check for alternate case features Checks Seurat object for the presence of features with the same spelling but alternate case.

Description

Check for alternate case features Checks Seurat object for the presence of features with the same spelling but alternate case.

Usage

Case_Check(
  seurat_object,
  gene_list,
  case_check_msg = TRUE,
  return_features = TRUE,
  assay = NULL
)

Arguments

seurat_object

Seurat object name.

gene_list

vector of genes to check.

case_check_msg

logical. Whether to print message to console if alternate case features are found in addition to inclusion in returned list. Default is TRUE.

return_features

logical. Whether to return vector of alternate case features. Default is TRUE.

assay

Name of assay to pull feature names from. If NULL will use the result of DefaultAssay(seurat_object).

Value

If features found returns vector of found alternate case features and prints message depending on parameters specified.

Examples

## Not run: 
alt_features <- Case_Check(seurat_object = obj_name, gene_list = DEG_list)

## End(Not run)