find_specific_marker {scCAN}

find_specific_marker

Description

Calculate cluster and cell type similarity based on the markers.

Usage

find_specific_marker(gene_name, f_list, type = "jacc")

Arguments

gene_name

A list of markers belong to the cluster.

f_list

A list of markers belongs to a reference cell type.

type

A parameter to select the method to measure cluster and cell type similarity

• jacc - Jaccard index.

• ac - Accuracy.

• f1 - F1 score.

.

Value

A vector of probabilties of a cluster belongs to cell types.