find_markers {scCAN}

find_markers

Description

Perform cluster-wise Wilcox test and fold-change for each gene.

Usage

find_markers(input_data_matrix, cluster_labels, identity = 1, threads = 8)

Arguments

input_data_matrix

An expression matrix in which rows are genes and columns are cells.

cluster_labels

A vector of cluster labels obtained from clustering methods.

identity

A parameter to select specific cluster identity = 1 by default.

threads

A parameter to control number of cores used for analysis threads = 1 by default.

Value

A list that contains p-value and fold-change ratio for all genes of each cluster.