jaccardmat {s4vd} | R Documentation |
jaccard matrix
Description
The function calculates the pairwise jaccard coefficients between the biclusters of two biclustering results
Usage
jaccardmat(res1,res2)
Arguments
res1 |
A biclustering result as an object of class Biclust |
res2 |
A biclustering result as an object of class Biclust |
Details
The result is matrix of pairwise jaccard coefficents between the biclusters of res1 and res2.
Author(s)
Martin Sill \ m.sill@dkfz.de
See Also
jaccardind
Examples
#lung cancer data set Bhattacharjee et al. 2001
data(lung200)
set.seed(12)
res1 <- biclust(lung200,method=BCs4vd(),pcerv=.5,pceru=0.01,ss.thr=c(0.6,0.65)
,start.iter=3,size=0.632,cols.nc=TRUE,steps=100,pointwise=TRUE
,merr=0.0001,iter=100,nbiclust=10,col.overlap=FALSE)
res2 <- biclust(lung200,method=BCPlaid())
jaccardmat(res1,res2)
[Package s4vd version 1.1-1 Index]