| chinook {rubias} | R Documentation |
SNP data from chinook reference populations
Description
Chinook salmon baseline data similar to that which can be downloaded from https://datadryad.org/stash/dataset/doi:10.5061/dryad.574sv. This data set includes 91 SNPs and 7301 fish and is what the Dryad data became after we converted from TaqMan to SNPtype assays (being forced to toss some loci) and tossed out a bunch of lousy historical samples from Trinity River.
Format
A tbl_df-ed (from dplyr) data frame with 7,301 rows and 185 variables. The first three columns are
- repunit (chr)
the reporting unit that the individual is in
- pop (chr)
the population from which the individual was sampled
- ID (chr)
Unique identifier of the individual fish
The remaining columns are two columns for each locus. These columns are named like, "Locus.1" and "Locus.2" for the first and second gene copies at that locus. For example, "Ots_104569-86.1" and "Ots_104569-86.2". The locus columns are ints and missing data is denoted by NA.
Source
https://datadryad.org/stash/dataset/doi:10.5061/dryad.574sv