taxonomy_mrca {rotl} | R Documentation |
Taxonomic MRCA
Description
Taxonomic Least Inclusive Common Ancestor (MRCA)
Usage
taxonomy_mrca(ott_ids = NULL, ...)
## S3 method for class 'taxon_mrca'
tax_rank(tax, ...)
## S3 method for class 'taxon_mrca'
tax_name(tax, ...)
## S3 method for class 'taxon_mrca'
ott_id(tax, ...)
## S3 method for class 'taxon_mrca'
unique_name(tax, ...)
## S3 method for class 'taxon_mrca'
tax_sources(tax, ...)
## S3 method for class 'taxon_mrca'
flags(tax, ...)
## S3 method for class 'taxon_mrca'
is_suppressed(tax, ...)
Arguments
ott_ids |
a vector of ott ids for the taxa whose MRCA is to be found (numeric). |
... |
additional arguments to customize the API request (see
|
tax |
an object generated by the |
Details
Given a set of OTT ids, get the taxon that is the most recent common ancestor (the MRCA) of all the identified taxa.
Value
taxonomy_mrca
returns a list about the taxonomic information relating to the MRCA for the ott_ids provided.tax_rank
returns a character vector of the taxonomic rank for the MRCA.tax_name
returns a character vector the Open Tree Taxonomy name for the MRCA.ott_id
returns a numeric vector of the ott id for the MRCA.
Examples
## Not run:
req <- taxonomy_mrca(ott_ids=c(515698,590452,643717))
tax_rank(req)
tax_name(req)
ott_id(req)
## End(Not run)
[Package rotl version 3.1.0 Index]