brauer_2008 {romic}R Documentation

Brauer 2008

Description

An RNA expression (microarray) dataset looking at how yeast gene expression changes as nutrient sources and nutrient richness changes.

brauer_2008 formatted as a tidy_omic object

brauer_2008 formatted as a triple_omic object

Usage

brauer_2008

brauer_2008_tidy

brauer_2008_triple

Format

A tibble with 18,000 rows and 8 columns:

name

Common gene name

BP

Gene ontology biological process of the gene

MF

Gene ontology molecular function of the gene

sample

Sample name

nutrient

Which nutrient limits growth (Glucose, Nitrogen, Phosphorous, Sulfur, Uracil, Leucine

DR

Dilution rate of the culture - basically how fast the cells are growing

expression

Expression level of the gene, log2 observation relative to a replicate of G0.3

An object of class tidy_omic (inherits from tomic, general) of length 2.

An object of class triple_omic (inherits from tomic, general) of length 4.

Details

This version of the dataset contains only 500 genes randomly selected from the ~6K genes in the complete dataset.

Source

https://pubmed.ncbi.nlm.nih.gov/17959824/


[Package romic version 1.1.3 Index]