| brauer_2008 {romic} | R Documentation |
Brauer 2008
Description
An RNA expression (microarray) dataset looking at how yeast gene expression changes as nutrient sources and nutrient richness changes.
brauer_2008 formatted as a tidy_omic object
brauer_2008 formatted as a triple_omic object
Usage
brauer_2008
brauer_2008_tidy
brauer_2008_triple
Format
A tibble with 18,000 rows and 8 columns:
- name
Common gene name
- BP
Gene ontology biological process of the gene
- MF
Gene ontology molecular function of the gene
- sample
Sample name
- nutrient
Which nutrient limits growth (Glucose, Nitrogen, Phosphorous, Sulfur, Uracil, Leucine
- DR
Dilution rate of the culture - basically how fast the cells are growing
- expression
Expression level of the gene, log2 observation relative to a replicate of G0.3
An object of class tidy_omic (inherits from tomic, general) of length 2.
An object of class triple_omic (inherits from tomic, general) of length 4.
Details
This version of the dataset contains only 500 genes randomly selected from the ~6K genes in the complete dataset.
Source
https://pubmed.ncbi.nlm.nih.gov/17959824/